PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G195700.1
Common NamePHAVU_003G195700g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB_related
Protein Properties Length: 300aa    MW: 32611.8 Da    PI: 9.1405
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G195700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.43.7e-1488132347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         +WT+eE++l++ + ++ G+g+W+ I++   k+Rt+ q+ s+ qky
  Phvul.003G195700.1  88 PWTEEEHKLFLVGLQKVGKGDWRGISKNYVKTRTPTQVASHAQKY 132
                         8*******************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.26281137IPR017930Myb domain
SuperFamilySSF466893.14E-1783138IPR009057Homeodomain-like
TIGRFAMsTIGR015579.7E-1784135IPR006447Myb domain, plants
SMARTSM007173.9E-1085135IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.3E-1187132IPR009057Homeodomain-like
CDDcd001678.45E-1088133No hitNo description
PfamPF002496.1E-1288132IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MSPSCAATDS VASGEIMLFG VRVVVDSMRK SVSMNNLSQY EHPQDGNNNN NTNNIKKEVL  60
TAGYASADDA VPHNSVRHRE RERKRGVPWT EEEHKLFLVG LQKVGKGDWR GISKNYVKTR  120
TPTQVASHAQ KYFLRRSNLN RRRRRSSLFD ITTDTVSAVL MEDEQVQNQD SLSHPQPVCP  180
AIPETSKSGF PMMPVYQFGV GSGVISVQGG KPLEELTLGQ GNIEHKVPIN LVRAIPVVAD  240
PKAPTVSDII TPSSGSAVDL PTLSLGLSFS SDQRQTSSRH PALHAIPCFS NGDSVISVA*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00631PBMTransfer from PK23829.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-168AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007155372.10.0hypothetical protein PHAVU_003G195700g
SwissprotQ2V9B03e-70MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBLV7CEN40.0V7CEN4_PHAVU; Uncharacterized protein
STRINGGLYMA05G01640.11e-140(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42483154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19000.21e-54MYB_related family protein